Release

このデータベースの版と内容

TUNOME v1.0
Released 2026-08-02
Species38
Annotated genes (total)1,607,273
Orthogroups (28-species set)39,311
Orthogroups (39-species set)60,568

How to cite this version

TUNOME v1.0 (released 2026-08-02), Integrated Tunicate Genome Database.

Tools

このリリースの作成に使ったソフトウェア

SoftwareVersionUsed for
EnTAPv0.10.8機能アノテーション（遺伝子の機能推定）
OrthoFinderv2.5.4オルソグループの推定（28種セット・39種セット）
BLAST+2.14.0+配列の相同性検索
RSEM—発現量の推定（A. aspersa / C. robusta）
JBrowse 2—ゲノムブラウザ

Genome data sources

各種のアセンブリの出典。This study は本研究で新たに構築したものです。 （横にスクロールできます）

Species Genes Genome size Scaffolds N50 GC % Gene model Date Publication Institution Sequencing Assembly Resource
Ascidiella aspersa 30,856 — — — — — — This study — — — —
Ascidia mentula 21,728 197.0 Mb 96 21.2Mb 39.19 X Dec. 2022 Bishop et al. 2023 WELLCOME SANGER INSTITUTE PacBio,Arima2 Hifiasm link
Aplidium turbinatum 31,276 605.5 Mb 26 34 Mb 37.60 X Nov. 2021 Bishop et al., 2022 Sanger Institute PacBio,Illumina,Arima Hifiasm link
Botrylloides leachii 33,048 159.1 Mb 1,778 210kb 41.52 ◯ Apr. 2018 Blanchoud et al. 2018 University of Otago Illumina Hiseq MaSuRCA —
Botryllus schlosseri 77,316 580.4 Mb 14 406Mb 40.56 ◯ Jul. 2013 Voskoboynik et al. 2013 Stanford University Roche 454 and Illumina BWA —
Bathochordaeus stygius 17,507 396.5 Mb 467,514 1.3 kb 36.50 X Mar. 2019 Naville et al., 2019 University of Bergen Illumina HiSeq; PacBio RSII PLATANUS v. 1.2.1; CANU v. 1.8; SSPACE-BASIC v. 2.0; SSPACE-LongRead v. 1.1 link
Boltenia villosa 57,684 334.2 Mb 192,141 2.7 kb 35.76 X Sep. 2023 NA Iridian Genomes Illumina SPAdes v. 2023 link
Botrylloides violaceus 15,080 120.9 Mb 831 1.03Mb 41.20 ◯ Aug. 2023 Sumner et al. 2023 California Polytechnic State University Illumina and ONT MaSuRCA link
Corella eumyota 19,234 129.3 Mb 104 20.6 Mb 31.55 X Aug. 2023 Bishop et al. 2024 Sanger Institute PacBio,Arima2 Hifiasm link
Corella inflata 50,846 120.8 Mb 67,285 9.31kb 33.16 ◯ Mar. 2020 DeBiasse et al. 2020 Whitney Laboratory for Marine Bioscience, University of Florida PacBio RSII, Illumina Hiseq-2500 Meraculous link
Clavelina lepadiformis 27,654 233.6 Mb 184 8.47Mb 35.63 ◯ Feb. 2024 Daric et al. 2024 Centre National de la Recherche Scientifique PacBio Sequel II hifiasm link
Ciona robusta 55,505 123.0 Mb 67 8.33Mb 35.89 ◯ Oct. 2019 Satou et al. 2019, 2022 Kyoto University PacBio RSII, Illumina Mecat link
Ciona savignyi 54,100 177.0 Mb 375 1.8Mb 36.55 ◯ NA NA NA NA NA —
Diplosoma virens 50,588 936.2 Mb 365 46.7 Mb 34.41 X Dec. 2023 NA Sanger Institute PacBio,Arima2 Hifiasm link
Halocynthia aurantium 39,783 128.1 Mb 11,610 30.9kb 36.67 ◯ NA NA NA NA NA —
Halocynthia papillosa 33,212 152.2 Mb 88 16.9 Mb 35.13 X Apr. 2025 NA Genoscope PacBio,Arima Hifiasm link
Halocynthia roretzi 38,491 119.7 Mb 3,047 201kb 36.43 ◯ NA NA NA NA NA —
Mesochordaeus erythrocephalus 23,681 874 Mb 745,784 1.9 kb 36.50 X Mar. 2019 Naville et al., 2019 University of Bergen Illumina HiSeq; PacBio RSII PLATANUS v. 1.2.1; CANU v. 1.8; SSPACE-BASIC v. 2.0; SSPACE-LongRead v. 1.1 link
Molgula occidentalis 57,037 249.7 Mb 21,251 28.5kb 30.50 ◯ Sep. 2014 Stolfi et al. 2014 New York University HiSeq 2000 Velvet —
Molgula occulta 55,169 174.8 Mb 23,663 14.5kb 35.40 ◯ Sep. 2014 Stolfi et al. 2014 New York University HiSeq 2000 Velvet —
Molgula oculata 47,945 154.4 Mb 10,554 35.8kb 35.81 ◯ Sep. 2014 Stolfi et al. 2014 New York University HiSeq 2000 Velvet —
Oikopleura albicans 38,925 366 Mb 92,906 213.8 kb 35.50 X Mar. 2019 Naville et al., 2019 University of Bergen Illumina HiSeq; PacBio RSII PLATANUS v. 1.2.1; CANU v. 1.8; SSPACE-BASIC v. 2.0; SSPACE-LongRead v. 1.1 link
Oikopleura dioica 17,498 64.3 Mb 18 16.2 Mb 41.06 ◯ May. 2021 Bliznina et al., 2021 OKINAWA INSTITUTE OF SCIENCE AND TECHNOLOGY Oxford Nanopore MinION, Illumina MiSeq Canu link
Oikopleura longicauda 63,340 308.7 Mb 178,440 2.4 kb 37.50 X Mar. 2019 Naville et al., 2019 University of Bergen Illumina HiSeq; PacBio RSII PLATANUS v. 1.2.1; CANU v. 1.8; SSPACE-BASIC v. 2.0; SSPACE-LongRead v. 1.1 link
Oikopleura vanhoeffeni 33,402 643.7 Mb 79,827 260 kb 32.13 X Mar. 2019 Naville et al., 2019 University of Bergen Illumina HiSeq; PacBio RSII PLATANUS v. 1.2.1; CANU v. 1.8; SSPACE-BASIC v. 2.0; SSPACE-LongRead v. 1.1 link
Perophora annectens 46,167 475.2 Mb 1,402 1.6 Mb 40.86 X Feb. 2025 NA Canada's national platform for genome sequencing and analysis Revio hifiasm v. 0.19.4; purge_dups v. 1.2.5 link
Pegea sp. 14,355 105.8 Mb 390 838.3 kb 28.02 X Dec. 2023 NA Bigelow Laboratory for Ocean Sciences PacBio; Illumina HiSeq MaSuRCA link
Phallusia fumigata 77,610 231.9 Mb 34,699 12.7kb 38.47 ◯ NA NA NA NA NA —
Polycarpa mamillaris 63,495 689.8 Mb 1,458 39.4 Mb 42.73 X May. 2025 NA WELLCOME SANGER INSTITUTE PacBio,Arima2 Hifiasm link
Phallusia mammillata 64,619 234.0 Mb 11,004 94.9kb 37.56 ◯ NA NA NA NA NA —
Salpa aspera 46,664 903.3 Mb 7,850 202.1 kb 36.37 X Jan. 2025 Castellano et al., 2023 University of Connecticut Oxford Nanopore Flye v. 2.4.2 link
Styela clava 25,823 340.5 Mb 211 20.8Mb 35.28 ◯ Feb. 2021 Wei et al. 2020 Ocean University of China PacBio RSII FALCON v. SEP-2017 link
Styela plicata 46,594 419.2 Mb 1,077 25 Mb 35.44 X Mar. 2024 NAGalià-Camps et al., 2024 (Preprint) universitat de barcelona PacBio, Illumina Flye, Novoplasty, purge_dups, juicer link
Salpa thompsoni 42,453 742.8 Mb 8,815 191.2 kb 36.59 X Feb. 2025 Castellano et al., 2023 University of Connecticut Oxford Nanopore Shasta v. 0.7.0 link
Trididemnum clinides 56,486 906.9 Mb 191 38 Mb 38.10 X Dec. 2023 Hirose et al., 2025 Sanger Institute PacBio,Arima2 Hifiasm link
Thalia democratica 37,764 790.7 Mb 1,217 83.6 Mb 25.34 X Mar. 2025 NA WELLCOME SANGER INSTITUTE PacBio,Arima2 Hifiasm link
Trididemnum miniatum 54,142 624.6 Mb 390 28.4 Mb 38.71 X Mar. 2024 NA Sanger Institute PacBio,Arima2 Hifiasm link
Trididemnum nubilum 40,196 1.1 Gb 687 45.5 Mb 36.95 X Feb. 2024 NA Sanger Institute PacBio,Arima2 Hifiasm link

BUSCO スコアなどの詳細は論文の Supplementary Table S1 を参照してください。

Release notes

VersionDateChanges
1.02026-08-02初回リリース。38種のゲノム・アノテーション・オルソグループを公開。